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Crystal structure of ruvc from deinococcus radiodurans

Analyse Crystal structure of ruvc from deinococcus radiodurans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7XHJ
Type: protein
Length: 303 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Crossover junction endodeoxyribonuclease ruvc
EC: 3.1.21.10
UniProt: Q9RX75
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 50% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Crossover junction endodeoxyribonuclease ruvc (EC 3.1.21.10)	protein	154	49% helix, 22% strand	Q9RX75
B	Crossover junction endodeoxyribonuclease ruvc (EC 3.1.21.10)	protein	149	50% helix, 23% strand	Q9RX75

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	241	0.51	0.75	33	empty
2	52	0.33	0.78	10	empty

Interfaces

1 interface between chains.

A–B · 963 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

7XHJ · Crystal structure of RuvC from Deinococcus radiodurans · the same entry in another collection · chain A against A, TM-score 1.00
Q9RX75 · AlphaFold monomer V2.0 prediction for crossover junction endodeoxyribonuclease ruvc… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RX75
Elsewhere: RCSB PDB 7XHJ · PDBe 7XHJ · UniProt Q9RX75

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