Research workbench
Crystal structure of the ctcp from streptomyces aureofaciens
Analyse Crystal structure of the ctcp from streptomyces aureofaciens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7XGB
- Type
- protein
- Length
- 2,138 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tetracycline 7-halogenase
- EC
- 1.14.19.49
- UniProt
- A0A1E7MYN1
- Pockets
- 20 · best druggability 0.77
Structure
x-ray diffraction · 4 distinct chains · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tetracycline 7-halogenase (EC 1.14.19.49) | protein | 537 | 45% helix, 18% strand | A0A1E7MYN1 |
| B | Tetracycline 7-halogenase (EC 1.14.19.49) | protein | 528 | 44% helix, 18% strand | A0A1E7MYN1 |
| C | Tetracycline 7-halogenase (EC 1.14.19.49) | protein | 544 | 45% helix, 17% strand | A0A1E7MYN1 |
| D | Tetracycline 7-halogenase (EC 1.14.19.49) | protein | 529 | 45% helix, 18% strand | A0A1E7MYN1 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 643 | 0.77 | 0.82 | 83 | empty |
| 2 | 659 | 0.76 | 0.82 | 74 | empty |
| 3 | 625 | 0.76 | 0.82 | 58 | empty |
| 4 | 517 | 0.76 | 0.83 | 59 | empty |
| 5 | 85 | 0.75 | 0.97 | 25 | empty |
Interfaces
3 interfaces between chains.
- A–C · 1360 Ų buried · 19 hydrogen bonds · protein-protein
- B–D · 1289 Ų buried · 21 hydrogen bonds · protein-protein
- A–B · 252 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 49 modified (engineered).
Compared structures
- 7XGB · Crystal structure of the ctcP from Streptomyces aureofaciens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1E7MYN1
- Elsewhere: RCSB PDB 7XGB · PDBe 7XGB · UniProt A0A1E7MYN1
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