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Crystal structure of the C-domain of the T.VAGINALIS inr binding protein, IBP39 (monoclinic form)
Analyse Crystal structure of the C-domain of the T.VAGINALIS inr binding protein, IBP39… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Q88
- Type
- protein
- Length
- 387 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 39 kda initiator binding protein
- UniProt
- Q95VR4
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 39 kda initiator binding protein | protein | 189 | 40% helix, 14% strand | Q95VR4 |
| B | 39 kda initiator binding protein | protein | 198 | 44% helix, 15% strand | Q95VR4 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.67 | 0.92 | 21 | empty |
| 2 | 53 | 0.53 | 0.89 | 21 | empty |
| 3 | 76 | 0.43 | 0.80 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 423 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 1Q88 · Crystal structure of the C-domain of the T.vaginalis Inr binding protein, IBP39… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q95VR4
- Elsewhere: RCSB PDB 1Q88 · PDBe 1Q88 · UniProt Q95VR4
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