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Crystal structure of pl-5 family polysaccharide lyase panpl from pandoraea apista at PH5.5 in apo form

Analyse Crystal structure of pl-5 family polysaccharide lyase panpl from pandoraea… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7WXL
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: POLY(BETA-D-mannuronate) lyase
EC: 4.2.2.3
Ligands: CL
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	POLY(BETA-D-mannuronate) lyase (EC 4.2.2.3)	protein	310	65% helix, 3% strand	—

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	340	0.61	0.78	51	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

7WXL · Crystal Structure of PL-5 family polysaccharide lyase PanPL from Pandoraea apista at… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7WXL · PDBe 7WXL

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