Research workbench
Brain tumor nhl domain
Analyse Brain tumor nhl domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Q7F
- Type
- protein
- Length
- 561 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Brain tumor CG10719-pa
- UniProt
- Q8MQJ9
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Brain tumor CG10719-pa | protein | 279 | 3% helix, 51% strand | Q8MQJ9 |
| B | Brain tumor CG10719-pa | protein | 282 | 2% helix, 50% strand | Q8MQJ9 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 432 | 0.72 | 0.83 | 53 | empty |
| 2 | 897 | 0.70 | 0.76 | 86 | empty |
| 3 | 301 | 0.70 | 0.84 | 38 | empty |
| 4 | 109 | 0.42 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 890 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8MQJ9
- Elsewhere: RCSB PDB 1Q7F · PDBe 1Q7F · UniProt Q8MQJ9
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