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Crystallographic structure of copper amine oxidase from arthrobacter glibiformis at pd 7.4 determined by only neutron diffraction data.
Analyse Crystallographic structure of copper amine oxidase from arthrobacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7WNO
- Type
- protein
- Length
- 621 residues
- Chains
- 1
- Method
- neutron diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenylethylamine oxidase
- EC
- 1.4.3.21
- UniProt
- P46881
- Ligands
- CU
- Pockets
- 6 · best druggability 0.61
Structure
neutron diffraction · 1 distinct chain · 13% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Phenylethylamine oxidase (EC 1.4.3.21) | protein | 621 | 13% helix, 42% strand | P46881 |
Ligands and binding sites
- CU · Copper (II) ion · metal · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 280 | 0.61 | 0.80 | 52 | empty |
| 2 | 227 | 0.60 | 0.80 | 26 | empty |
| 3 | 74 | 0.45 | 0.82 | 17 | empty |
| 4 | 135 | 0.43 | 0.75 | 30 | empty |
| 5 | 70 | 0.36 | 0.77 | 18 | empty |
Modifications
Observed in the structure: 2 modified, 1 disulfide (nonstandard, disulfide).
Compared structures
- 7WNO · Crystallographic structure of copper amine oxidase from Arthrobacter glibiformis at pD… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46881
- Elsewhere: RCSB PDB 7WNO · PDBe 7WNO · UniProt P46881
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