Research workbench
Closed spike of bombyx mori cytoplasmic polyhedrosis virus
Analyse Closed spike of bombyx mori cytoplasmic polyhedrosis virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7WHM
- Type
- protein
- Length
- 1,214 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pppde domain-containing protein
- UniProt
- D0EZK7
- Pockets
- 14 · best druggability 0.77
Structure
electron microscopy · 1 distinct chain · 32% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pppde domain-containing protein | protein | 1214 | 32% helix, 27% strand | D0EZK7 |
Pockets
14 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 347 | 0.77 | 0.87 | 64 | empty |
| 2 | 72 | 0.71 | 0.96 | 21 | empty |
| 3 | 415 | 0.61 | 0.76 | 45 | empty |
| 4 | 116 | 0.56 | 0.84 | 25 | empty |
| 5 | 156 | 0.48 | 0.78 | 23 | empty |
Compared structures
- 7WHM · Closed spike of Bombyx mori cytoplasmic polyhedrosis virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0EZK7
- Elsewhere: RCSB PDB 7WHM · PDBe 7WHM · UniProt D0EZK7
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