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Crystal structure of E.COLI pseudouridine kinase psuk complexed with N1-methyl-pseudouridine

Analyse Crystal structure of E.COLI pseudouridine kinase psuk complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7W93
Type: protein
Length: 307 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pfkb domain protein
UniProt: A0A140N873
Ligands: 8IZ, K
Pockets: 2 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pfkb domain protein	protein	307	39% helix, 23% strand	A0A140N873

Ligands and binding sites

8IZ · 5-[(2S,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl) oxolan-2-yl]-1-methyl-pyrimidine-2,4-dione · ligand · chains A
K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	621	0.67	0.77	59	8IZ
2	51	0.30	0.76	17	empty

Compared structures

7W93 · Crystal structure of E.coli pseudouridine kinase PsuK complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A140N873
Elsewhere: RCSB PDB 7W93 · PDBe 7W93 · UniProt A0A140N873

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