Research workbench
Cryo-EM structure of plant receptor like protein RXEG1
Analyse Cryo-EM structure of plant receptor like protein RXEG1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7W3X
- Type
- protein
- Length
- 893 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane-localized lrr receptor-like protein
- UniProt
- A0A2I8B6R1
- Ligands
- NAG, MAN, BMA
- Pockets
- 4 · best druggability 0.61
Structure
electron microscopy · 1 distinct chain · 14% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Membrane-localized lrr receptor-like protein | protein | 893 | 14% helix, 20% strand | A0A2I8B6R1 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 21 copies · chains C
- MAN · alpha-D-mannopyranose · sugar · 7 copies · chains C
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 422 | 0.61 | 0.76 | 49 | NAG |
| 2 | 234 | 0.59 | 0.80 | 25 | NAG |
| 3 | 53 | 0.35 | 0.79 | 15 | empty |
| 4 | 50 | 0.33 | 0.78 | 12 | empty |
Modifications
Observed in the structure: 16 glycan, 4 disulfide (N-glycosylation, disulfide).
Compared structures
- 7W3X · Cryo-EM structure of plant receptor like protein RXEG1 · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2I8B6R1
- Elsewhere: RCSB PDB 7W3X · PDBe 7W3X · UniProt A0A2I8B6R1
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