Research workbench
Crystal structure of SARS-cov-2 spike receptor-binding domain in complex with neutralizing nanobody nb-007
Analyse Crystal structure of SARS-cov-2 spike receptor-binding domain in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7W1S
- Type
- protein
- Length
- 305 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spike protein S1; Nanobody nb-007
- UniProt
- P0DTC2
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spike protein S1 | protein | 194 | 19% helix, 30% strand | P0DTC2 |
| B | Nanobody nb-007 | protein | 111 | 5% helix, 55% strand | — |
Interfaces
1 interface between chains.
- A–B · 656 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 7W1S · Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7W1S · PDBe 7W1S · UniProt P0DTC2
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