Research workbench
The product template domain of avim
Analyse The product template domain of avim in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VWK
- Type
- protein
- Length
- 500 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyketide synthase
- UniProt
- O05170
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyketide synthase | protein | 260 | 17% helix, 38% strand | O05170 |
| B | Polyketide synthase | protein | 240 | 13% helix, 40% strand | O05170 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 199 | 0.68 | 0.86 | 37 | empty |
| 2 | 252 | 0.59 | 0.79 | 31 | empty |
| 3 | 239 | 0.54 | 0.77 | 30 | empty |
| 4 | 52 | 0.27 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 666 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 7VWK · The product template domain of AviM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O05170
- Elsewhere: RCSB PDB 7VWK · PDBe 7VWK · UniProt O05170
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