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The solution structure of the C-terminal domain from flagelliform spidroin
Analyse The solution structure of the C-terminal domain from flagelliform spidroin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VU7
- Type
- protein
- Length
- 178 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagelliform fibroin
- UniProt
- A0FK72
- Pockets
- 2 · best druggability 0.35
Structure
solution nmr · 1 distinct chain · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Flagelliform fibroin | protein | 89 | 67% helix, 0% strand | A0FK72 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.35 | 0.77 | 16 | empty |
| 2 | 54 | 0.31 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1518 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7VU7 · The Solution structure of the C-terminal domain from flagelliform spidroin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0FK72
- Elsewhere: RCSB PDB 7VU7 · PDBe 7VU7 · UniProt A0FK72
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