Research workbench
Structure of infectious bursal disease virus gx strain
Analyse Structure of infectious bursal disease virus gx strain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VRP
- Type
- protein
- Length
- 5,466 residues
- Chains
- 13
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Structural polyprotein
- EC
- 3.4.21.-
- UniProt
- Q6SZ77
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 6 distinct chains · 10% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Structural polyprotein (EC 3.4.21.-) | protein | 410 | 13% helix, 43% strand | Q6SZ77 |
| L, I | Structural polyprotein (EC 3.4.21.-) | protein | 419 | 10% helix, 41% strand | Q6SZ77 |
| M, K, E, B | Structural polyprotein (EC 3.4.21.-) | protein | 426 | 10% helix, 41% strand | Q6SZ77 |
| F, H, G | Structural polyprotein (EC 3.4.21.-) | protein | 420 | 10% helix, 43% strand | Q6SZ77 |
| C, D | Structural polyprotein (EC 3.4.21.-) | protein | 416 | 9% helix, 43% strand | Q6SZ77 |
| J | Structural polyprotein (EC 3.4.21.-) | protein | 422 | 11% helix, 41% strand | Q6SZ77 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 500 | 0.86 | 0.93 | 47 | empty |
| 2 | 478 | 0.86 | 0.93 | 47 | empty |
| 3 | 480 | 0.86 | 0.93 | 49 | empty |
| 4 | 471 | 0.86 | 0.93 | 43 | empty |
| 5 | 232 | 0.84 | 0.97 | 44 | empty |
Interfaces
29 interfaces between chains.
- A–C · 2586 Ų buried · 32 hydrogen bonds · protein-protein
- L–K · 2516 Ų buried · 33 hydrogen bonds · protein-protein
- F–D · 2498 Ų buried · 27 hydrogen bonds · protein-protein
- I–H · 2490 Ų buried · 29 hydrogen bonds · protein-protein
- I–G · 2482 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 7VRP · Structure of infectious bursal disease virus Gx strain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6SZ77
- Elsewhere: RCSB PDB 7VRP · PDBe 7VRP · UniProt Q6SZ77
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