Research workbench
Structure of infectious bursal disease virus gt strain
Analyse Structure of infectious bursal disease virus gt strain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VRN
- Type
- protein
- Length
- 5,479 residues
- Chains
- 13
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Structural polyprotein
- EC
- 3.4.21.-
- UniProt
- Q98VX2
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 5 distinct chains · 10% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Structural polyprotein (EC 3.4.21.-) | protein | 410 | 9% helix, 45% strand | Q98VX2 |
| K, F, M, H, J, B, E | Structural polyprotein (EC 3.4.21.-) | protein | 426 | 10% helix, 47% strand | Q98VX2 |
| L | Structural polyprotein (EC 3.4.21.-) | protein | 419 | 11% helix, 46% strand | Q98VX2 |
| I | Structural polyprotein (EC 3.4.21.-) | protein | 420 | 8% helix, 48% strand | Q98VX2 |
| C, D, G | Structural polyprotein (EC 3.4.21.-) | protein | 416 | 10% helix, 47% strand | Q98VX2 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 484 | 0.86 | 0.93 | 43 | empty |
| 2 | 467 | 0.86 | 0.93 | 42 | empty |
| 3 | 464 | 0.86 | 0.93 | 52 | empty |
| 4 | 462 | 0.85 | 0.92 | 46 | empty |
| 5 | 210 | 0.84 | 0.97 | 50 | empty |
Interfaces
29 interfaces between chains.
- C–B · 2581 Ų buried · 34 hydrogen bonds · protein-protein
- F–D · 2578 Ų buried · 31 hydrogen bonds · protein-protein
- H–G · 2536 Ų buried · 37 hydrogen bonds · protein-protein
- I–G · 2531 Ų buried · 30 hydrogen bonds · protein-protein
- A–B · 2525 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 7VRN · Structure of infectious bursal disease virus Gt strain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q98VX2
- Elsewhere: RCSB PDB 7VRN · PDBe 7VRN · UniProt Q98VX2
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