Research workbench
The apo-state ATALMT1 structures at pH 5 (ALMT1APO/PH5)
Analyse The apo-state ATALMT1 structures at pH 5 (ALMT1APO/PH5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VQ3
- Type
- protein
- Length
- 800 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aluminum-activated malate transporter 1
- UniProt
- Q9SJE9
- Pockets
- 13 · best druggability 0.75
Structure
electron microscopy · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Aluminum-activated malate transporter 1 | protein | 400 | 77% helix, 0% strand | Q9SJE9 |
Pockets
13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 864 | 0.75 | 0.79 | 78 | empty |
| 2 | 262 | 0.57 | 0.77 | 36 | empty |
| 3 | 193 | 0.56 | 0.80 | 33 | empty |
| 4 | 198 | 0.56 | 0.79 | 34 | empty |
| 5 | 236 | 0.53 | 0.76 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 3294 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7VQ3 · The apo-state AtALMT1 structures at pH 5 (ALMT1apo/pH5) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SJE9 · AlphaFold monomer V2.0 prediction for aluminum-activated malate transporter 1 (Q9SJE9) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SJE9
- Elsewhere: RCSB PDB 7VQ3 · PDBe 7VQ3 · UniProt Q9SJE9
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