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Solution NMR structures of DNA minidumbbell formed with two regular ctttg pentaloops

Analyse Solution NMR structures of DNA minidumbbell formed with two regular ctttg… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7VM9
Type
DNA
Length
10 nucleotides
Chains
1
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA (5'-D(*CP*TP*TP*TP*GP*CP*TP*TP*TP*G)-3')
Ligands
NA

Structure

solution nmr · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA (5'-D(*CP*TP*TP*TP*GP*CP*TP*TP*TP*G)-3')dna10——

Ligands and binding sites

  • NA · Sodium ion · metal · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7VM9 · Solution NMR structures of DNA minidumbbell formed with two regular CTTTG pentaloops · the same entry in another collection · chain A against A, TM-score 1.00

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