Research workbench
Crystal structure of a bacterial SER/THR kinase
Analyse Crystal structure of a bacterial SER/THR kinase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VKC
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIPA_C domain-containing protein
- UniProt
- Q5ZSZ6
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIPA_C domain-containing protein | protein | 316 | 40% helix, 13% strand | Q5ZSZ6 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 178 | 0.67 | 0.87 | 30 | empty |
| 2 | 199 | 0.58 | 0.81 | 27 | empty |
| 3 | 53 | 0.52 | 0.88 | 18 | empty |
| 4 | 54 | 0.31 | 0.76 | 13 | empty |
Modifications
Observed in the structure: 7 modified (engineered, phosphorylation).
Compared structures
- 7VKC · Crystal structure of a bacterial Ser/Thr kinase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZSZ6
- Elsewhere: RCSB PDB 7VKC · PDBe 7VKC · UniProt Q5ZSZ6
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