Research workbench
Yeast GID10 with pro-peptide
Analyse Yeast GID10 with pro-peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VGW
- Type
- protein
- Length
- 418 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BJ4_G0041530.MRNA.1.CDS.1
- UniProt
- A0A6L0ZC52
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BJ4_G0041530.MRNA.1.CDS.1 | protein | 209 | 12% helix, 37% strand | A0A6L0ZC52 |
| B | BJ4_G0041530.MRNA.1.CDS.1 | protein | 209 | 9% helix, 38% strand | A0A6L0ZC52 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 165 | 0.64 | 0.85 | 20 | empty |
| 2 | 231 | 0.54 | 0.77 | 29 | empty |
| 3 | 67 | 0.34 | 0.77 | 13 | empty |
| 4 | 66 | 0.31 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 793 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 7VGW · Yeast gid10 with Pro-peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6L0ZC52
- Elsewhere: RCSB PDB 7VGW · PDBe 7VGW · UniProt A0A6L0ZC52
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.