Research workbench
Plexin B1 extracellular fragment in complex with lasso-grafted PB1M6A9 peptide
Analyse Plexin B1 extracellular fragment in complex with lasso-grafted PB1M6A9 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VG7
- Type
- protein
- Length
- 642 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O43157, P11684
- Ligands
- NAG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 496 | — | O43157 |
| B | — | protein | 146 | — | P11684 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VG7 · Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide · the same entry in another collection · chain A against A, TM-score 1.00
- O43157 · AlphaFold monomer V2.0 prediction for plexin-B1 (O43157) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P11684 · AlphaFold monomer V2.0 prediction for uteroglobin (P11684) · a predicted model of the same protein · chain B against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O43157
- Every structure of UniProt P11684
- Elsewhere: RCSB PDB 7VG7 · PDBe 7VG7 · UniProt O43157 · UniProt P11684
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