Research workbench

Gene product of AT3G17210 from arabidopsis thaliana

Analyse Gene product of AT3G17210 from arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1Q4R
Type: protein
Length: 103 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein AT3G17210
UniProt: Q9LUV2
Ligands: MG
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein AT3G17210	protein	103	36% helix, 30% strand	Q9LUV2

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.45	0.83	13	empty

Modifications

Observed in the structure: 1 modified (engineered).

Compared structures

1Q4R · Gene Product of At3g17210 from Arabidopsis Thaliana · the same entry in another collection · chain A against A, TM-score 1.00
Q9LUV2 · AlphaFold monomer V2.0 prediction for stress-response A/B barrel domain-containing… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LUV2
Elsewhere: RCSB PDB 1Q4R · PDBe 1Q4R · UniProt Q9LUV2

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