Research workbench
Crystal structure of cyclosorus parasiticus chalcone synthase 1 (CPCHS1)
Analyse Crystal structure of cyclosorus parasiticus chalcone synthase 1 (CPCHS1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VEY
- Type
- protein
- Length
- 1,589 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chalcone synthases
- Pockets
- 14 · best druggability 0.76
Structure
x-ray diffraction · 4 distinct chains · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chalcone synthases | protein | 396 | 41% helix, 23% strand | — |
| B | Chalcone synthases | protein | 398 | 40% helix, 23% strand | — |
| C | Chalcone synthases | protein | 399 | 39% helix, 23% strand | — |
| D | Chalcone synthases | protein | 396 | 40% helix, 23% strand | — |
Pockets
14 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 332 | 0.76 | 0.87 | 47 | empty |
| 2 | 302 | 0.75 | 0.87 | 44 | empty |
| 3 | 326 | 0.75 | 0.86 | 46 | empty |
| 4 | 357 | 0.74 | 0.85 | 49 | empty |
| 5 | 747 | 0.70 | 0.77 | 97 | empty |
Interfaces
4 interfaces between chains.
- A–C · 3655 Ų buried · 71 hydrogen bonds · protein-protein
- B–D · 3648 Ų buried · 69 hydrogen bonds · protein-protein
- A–B · 554 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 540 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 7VEY · Crystal structure of Cyclosorus parasiticus chalcone synthase 1 (CpCHS1) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7VEY · PDBe 7VEY
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