Research workbench

Frischella perrara beta-fructofuranosidase in complex with fructose

Analyse Frischella perrara beta-fructofuranosidase in complex with fructose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7VCP
Type: protein
Length: 490 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sucrose-6-phosphate hydrolase
EC: 3.2.1.26
UniProt: A0A0A7S0J1
Ligands: FRU
Pockets: 5 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sucrose-6-phosphate hydrolase (EC 3.2.1.26)	protein	490	7% helix, 53% strand	A0A0A7S0J1

Ligands and binding sites

FRU · beta-D-fructofuranose · sugar · chains A
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
1PE · Pentaethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	297	0.58	0.77	34	FRU
2	184	0.50	0.77	24	empty
3	131	0.44	0.76	26	empty
4	57	0.31	0.75	13	1PE
5	57	0.29	0.75	18	empty

Compared structures

7VCP · Frischella perrara beta-fructofuranosidase in complex with fructose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0A7S0J1
Elsewhere: RCSB PDB 7VCP · PDBe 7VCP · UniProt A0A0A7S0J1

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