Research workbench
Cryo-EM structure of camellia sinensis glutamine synthetase csgsib inactive pentamer state II
Analyse Cryo-EM structure of camellia sinensis glutamine synthetase csgsib inactive… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7V4K
- Type
- protein
- Length
- 1,195 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamine synthetase
- EC
- 6.3.1.2
- UniProt
- Q762D2
- Pockets
- 20 · best druggability 0.63
Structure
electron microscopy · 1 distinct chain · 27% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | Glutamine synthetase (EC 6.3.1.2) | protein | 239 | 27% helix, 31% strand | Q762D2 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 167 | 0.63 | 0.85 | 20 | empty |
| 2 | 146 | 0.63 | 0.86 | 23 | empty |
| 3 | 155 | 0.63 | 0.85 | 24 | empty |
| 4 | 145 | 0.61 | 0.85 | 23 | empty |
| 5 | 329 | 0.60 | 0.78 | 38 | empty |
Interfaces
9 interfaces between chains.
- A–B · 1320 Ų buried · 18 hydrogen bonds · protein-protein
- B–E · 1312 Ų buried · 20 hydrogen bonds · protein-protein
- C–D · 1303 Ų buried · 19 hydrogen bonds · protein-protein
- A–C · 1298 Ų buried · 18 hydrogen bonds · protein-protein
- D–E · 1291 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 7V4K · Cryo-EM Structure of Camellia sinensis glutamine synthetase CsGSIb inactive Pentamer… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q762D2
- Elsewhere: RCSB PDB 7V4K · PDBe 7V4K · UniProt Q762D2
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