Research workbench
Solution structure and function of an essential cmp kinase of streptococcus pneumoniae
Analyse Solution structure and function of an essential cmp kinase of streptococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Q3T
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytidylate kinase
- EC
- 2.7.4.14
- UniProt
- Q97PK6
- Pockets
- 3 · best druggability 0.64
Structure
solution nmr · 1 distinct chain · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytidylate kinase (EC 2.7.4.14) | protein | 223 | 49% helix, 17% strand | Q97PK6 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 577 | 0.64 | 0.76 | 50 | empty |
| 2 | 57 | 0.41 | 0.81 | 15 | empty |
| 3 | 69 | 0.33 | 0.76 | 15 | empty |
Compared structures
- 1Q3T · Solution structure and function of an essential CMP kinase of Streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
- Q97PK6 · AlphaFold monomer V2.0 prediction for cytidylate kinase (Q97PK6) · a predicted model of the same protein · chain A against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97PK6
- Elsewhere: RCSB PDB 1Q3T · PDBe 1Q3T · UniProt Q97PK6
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