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Histone B from methanothermus fervidus

Analyse Histone B from methanothermus fervidus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BFM
Type: protein
Length: 138 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Histone B
UniProt: P19267
Pockets: 1 · best druggability 0.60

Structure

solution nmr · 1 distinct chain · 74% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Histone B	protein	69	74% helix, 4% strand	P19267

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.60	0.91	19	empty

Interfaces

1 interface between chains.

A–B · 1602 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

1BFM · Histone B from methanothermus fervidus · the same entry in another collection · chain A against A, TM-score 1.00
P19267 · AlphaFold monomer V2.0 prediction for DNA-binding protein hmf-2 (P19267) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19267
Elsewhere: RCSB PDB 1BFM · PDBe 1BFM · UniProt P19267

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