Research workbench
Crystal structure of ECL_RS08780, putative sugar transport system periplasmic sugar-binding protein
Analyse Crystal structure of ECL_RS08780, putative sugar transport system periplasmic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7V09
- Type
- protein
- Length
- 806 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multiple sugar transport system periplasmic sugar-binding protein
- UniProt
- A0A0H3CHG3
- Ligands
- MG
- Pockets
- 8 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Multiple sugar transport system periplasmic sugar-binding protein | protein | 403 | 48% helix, 17% strand | A0A0H3CHG3 |
Ligands and binding sites
- MG · Magnesium ion · metal · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 616 | 0.68 | 0.77 | 59 | empty |
| 2 | 547 | 0.65 | 0.76 | 56 | empty |
| 3 | 143 | 0.41 | 0.74 | 27 | empty |
| 4 | 106 | 0.34 | 0.73 | 23 | empty |
| 5 | 64 | 0.31 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 804 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 7V09 · Crystal structure of ECL_RS08780, putative sugar transport system periplasmic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3CHG3
- Elsewhere: RCSB PDB 7V09 · PDBe 7V09 · UniProt A0A0H3CHG3
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