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Encoded conformational dynamics of the HIV splice site A3 regulatory locus: implications for differential binding of hnrnp splicing auxiliary factors

Analyse Encoded conformational dynamics of the HIV splice site A3 regulatory locus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7V06
Type: RNA
Length: 43 nucleotides
Chains: 1
Method: solution nmr; solution scattering
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (43-mer)
Pockets: 1 · best druggability 0.49

Structure

solution nmr; solution scattering · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (43-mer)	rna	43	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	245	0.49	0.75	17	empty

Compared structures

7V06 · Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7V06 · PDBe 7V06

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