Research workbench
Kinetically trapped misfolded state of the tetrahymena ribozyme
Analyse Kinetically trapped misfolded state of the tetrahymena ribozyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7UVT
- Type
- RNA
- Length
- 386 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (386-mer)
- Pockets
- 14 · best druggability 0.75
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (386-mer) | rna | 386 | — | — |
Pockets
14 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 711 | 0.75 | 0.82 | 37 | empty |
| 2 | 936 | 0.69 | 0.75 | 46 | empty |
| 3 | 795 | 0.68 | 0.76 | 30 | empty |
| 4 | 494 | 0.64 | 0.78 | 29 | empty |
| 5 | 646 | 0.61 | 0.74 | 28 | empty |
Compared structures
- 7UVT · Kinetically trapped misfolded state of the Tetrahymena ribozyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7UVT · PDBe 7UVT
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