Research workbench
Allo-TRNAUTU1 in the a, P, and E sites of the E. COLI ribosome
Analyse Allo-TRNAUTU1 in the a, P, and E sites of the E. COLI ribosome in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7UR5
- Type
- RNA
- Length
- 270 nucleotides
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Allo-TRNAUTU1
- Pockets
- 6 · best druggability 0.75
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| v, y, w | Allo-TRNAUTU1 | rna | 90 | — | — |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1044 | 0.75 | 0.78 | 50 | empty |
| 2 | 1022 | 0.74 | 0.78 | 41 | empty |
| 3 | 642 | 0.73 | 0.81 | 32 | empty |
| 4 | 416 | 0.55 | 0.74 | 24 | empty |
| 5 | 62 | 0.43 | 0.83 | 14 | empty |
Interfaces
2 interfaces between chains.
- v–y · 140 Ų buried · 6 hydrogen bonds · nucleic-nucleic
- v–w · 46 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 7UR5 · allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome · the same entry in another collection · chain v against v, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7UR5 · PDBe 7UR5
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