Research workbench
Cryo-EM of bundling pili from pyrobaculum calidifontis
Analyse Cryo-EM of bundling pili from pyrobaculum calidifontis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7UEG
- Type
- protein
- Length
- 1,080 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilin
- UniProt
- A3MUL8
- Pockets
- 6 · best druggability 0.79
Structure
electron microscopy · 1 distinct chain · 5% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, B, C, D, F | Pilin | protein | 180 | 5% helix, 39% strand | A3MUL8 |
Pockets
6 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 792 | 0.79 | 0.82 | 71 | empty |
| 2 | 770 | 0.78 | 0.82 | 61 | empty |
| 3 | 708 | 0.78 | 0.82 | 64 | empty |
| 4 | 727 | 0.77 | 0.81 | 63 | empty |
| 5 | 760 | 0.76 | 0.80 | 66 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 7UEG · Cryo-EM of bundling pili from Pyrobaculum calidifontis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3MUL8
- Elsewhere: RCSB PDB 7UEG · PDBe 7UEG · UniProt A3MUL8
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