Research workbench
Designed pentameric proton channel llql
Analyse Designed pentameric proton channel llql in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7UDV
- Type
- protein
- Length
- 250 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- De novo designed proton channel llql
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 4 distinct chains · 92% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | De novo designed proton channel llql | protein | 24 | 92% helix, 0% strand | — |
| B, C, D, F, H, I | De novo designed proton channel llql | protein | 25 | 92% helix, 0% strand | — |
| E, G | De novo designed proton channel llql | protein | 25 | 92% helix, 0% strand | — |
| J | De novo designed proton channel llql | protein | 26 | 92% helix, 0% strand | — |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.74 | 0.92 | 25 | empty |
| 2 | 113 | 0.72 | 0.92 | 25 | empty |
| 3 | 230 | 0.60 | 0.79 | 26 | empty |
| 4 | 56 | 0.55 | 0.88 | 15 | empty |
| 5 | 105 | 0.43 | 0.76 | 16 | empty |
Interfaces
23 interfaces between chains.
- F–J · 609 Ų buried · 2 hydrogen bonds · protein-protein
- A–E · 609 Ų buried · 1 hydrogen bond · protein-protein
- I–J · 607 Ų buried · 2 hydrogen bonds · protein-protein
- F–G · 607 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 602 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7UDV · Designed pentameric proton channel LLQL · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7UDV · PDBe 7UDV
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