Research workbench
Structure of SPAC806.04C protein from fission yeast bound to ALF4 and CO2+
Analyse Structure of SPAC806.04C protein from fission yeast bound to ALF4 and CO2+ in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7U1Y
- Type
- protein
- Length
- 439 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Damage-control phosphatase SPAC806.04C
- EC
- 3.1.3.-
- UniProt
- Q9UT55
- Ligands
- ALF, GLC, FRU, CO, K
- Pockets
- 5 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Damage-control phosphatase SPAC806.04C (EC 3.1.3.-) | protein | 439 | 56% helix, 10% strand | Q9UT55 |
Ligands and binding sites
- ALF · Tetrafluoroaluminate ion · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
- FRU · beta-D-fructofuranose · sugar · chains A
- CO · Cobalt (II) ion · metal · 2 copies · chains A
- K · Potassium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 175 | 0.65 | 0.85 | 34 | ALF, CO |
| 2 | 83 | 0.47 | 0.82 | 20 | empty |
| 3 | 88 | 0.38 | 0.77 | 18 | empty |
| 4 | 86 | 0.38 | 0.77 | 19 | empty |
| 5 | 84 | 0.38 | 0.77 | 28 | empty |
Compared structures
- 7U1Y · Structure of SPAC806.04c protein from fission yeast bound to AlF4 and Co2+ · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UT55 · AlphaFold monomer V2.0 prediction for damage-control phosphatase SPAC806.04C (Q9UT55) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UT55
- Elsewhere: RCSB PDB 7U1Y · PDBe 7U1Y · UniProt Q9UT55
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