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Crystal structure of lens culinaris vicilin

Analyse Crystal structure of lens culinaris vicilin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7U1H
Type: protein
Length: 1,093 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Allergen len C 1.0101
UniProt: Q84UI1
Pockets: 10 · best druggability 0.77

Structure

x-ray diffraction · 3 distinct chains · 18% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Allergen len C 1.0101	protein	365	18% helix, 42% strand	Q84UI1
B	Allergen len C 1.0101	protein	365	18% helix, 43% strand	Q84UI1
C	Allergen len C 1.0101	protein	363	18% helix, 43% strand	Q84UI1

Pockets

10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	599	0.77	0.84	74	empty
2	71	0.73	0.97	21	empty
3	236	0.70	0.85	39	empty
4	194	0.66	0.85	40	empty
5	383	0.59	0.76	45	empty

Interfaces

2 interfaces between chains.

B–C · 2509 Å² buried · 39 hydrogen bonds · protein-protein
A–B · 1040 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

7U1H · Crystal structure of Lens culinaris vicilin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt Q84UI1
Elsewhere: RCSB PDB 7U1H · PDBe 7U1H · UniProt Q84UI1

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