Research workbench
NMR solution structure of DR0079: an hypothetical nudix protein from D. radiodurans
Analyse NMR solution structure of DR0079: an hypothetical nudix protein from D.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Q27
- Type
- protein
- Length
- 171 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative nudix hydrolase DR0079
- UniProt
- Q9RY71
- Pockets
- 3 · best druggability 0.68
Structure
solution nmr · 1 distinct chain · 20% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative nudix hydrolase DR0079 | protein | 171 | 20% helix, 27% strand | Q9RY71 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.68 | 0.86 | 25 | empty |
| 2 | 166 | 0.53 | 0.79 | 26 | empty |
| 3 | 203 | 0.52 | 0.77 | 27 | empty |
Compared structures
- 1Q27 · NMR Solution Structure of DR0079: An hypothetical Nudix protein from D. radiodurans · the same entry in another collection · chain A against A, TM-score 1.00
- Q9RY71 · AlphaFold monomer V2.0 prediction for nudix hydrolase DR_0079 (Q9RY71) · a predicted model of the same protein · chain A against A, TM-score 0.58
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RY71
- Elsewhere: RCSB PDB 1Q27 · PDBe 1Q27 · UniProt Q9RY71
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