Research workbench
Crystal structure of the E. COLI thim riboswitch in complex with N1, N1-dimethyl-N2-(quinoxalin-6-YLMETHYL)ETHANE-1,2-diamine (linked compound 37)
Analyse Crystal structure of the E. COLI thim riboswitch in complex with N1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TZT
- Type
- RNA
- Length
- 79 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (79-mer)
- Ligands
- KXC, MN, MG
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (79-mer) | rna | 79 | — | — |
Ligands and binding sites
- KXC · 6-methylquinoxaline · ligand · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 598 | 0.68 | 0.78 | 36 | KXC |
| 2 | 100 | 0.34 | 0.74 | 15 | empty |
| 3 | 120 | 0.33 | 0.72 | 14 | empty |
Compared structures
- 7TZT · Crystal structure of the E. coli thiM riboswitch in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7TZT · PDBe 7TZT
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