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Crystal structure of SARS-cov-2 NSP3 macrodomain at pH 10 (P43 crystal form)

Analyse Crystal structure of SARS-cov-2 NSP3 macrodomain at pH 10 (P43 crystal form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7TWS
Type: protein
Length: 337 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Non-structural protein 3
EC: 3.4.19.121, 3.4.22.-
UniProt: P0DTD1
Pockets: 3 · best druggability 0.64

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Non-structural protein 3 (EC 3.4.19.121, 3.4.22.-)	protein	168	40% helix, 19% strand	P0DTD1
B	Non-structural protein 3 (EC 3.4.19.121, 3.4.22.-)	protein	169	41% helix, 19% strand	P0DTD1

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	409	0.64	0.78	34	empty
2	181	0.54	0.79	37	empty
3	137	0.52	0.80	23	empty

Interfaces

1 interface between chains.

A–B · 520 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

7TWS · Crystal structure of SARS-CoV-2 NSP3 macrodomain at pH 10 (P43 crystal form) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTD1
Elsewhere: RCSB PDB 7TWS · PDBe 7TWS · UniProt P0DTD1

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