Research workbench
Crystal structure of the putative oxidoreductase of DUF1479-containing protein family YPO2976 from yersinia pestis bound to caps
Analyse Crystal structure of the putative oxidoreductase of DUF1479-containing protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TWC
- Type
- protein
- Length
- 416 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DUF1479 domain-containing protein
- UniProt
- A0A3G5LE49
- Ligands
- MG, PO4, SO4
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DUF1479 domain-containing protein | protein | 416 | 42% helix, 15% strand | A0A3G5LE49 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
- PO4 · Phosphate ion · ion · 4 copies · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- CXS · 3-cyclohexyl-1-propylsulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 852 | 0.76 | 0.80 | 87 | CXS, MG, PO4 |
| 2 | 51 | 0.27 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 7TWC · Crystal Structure of the Putative Oxidoreductase of DUF1479-containing Protein Family… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3G5LE49
- Elsewhere: RCSB PDB 7TWC · PDBe 7TWC · UniProt A0A3G5LE49
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