Research workbench
Small hepatitis B virus surface protein without cytosolic and antigenic loops
Analyse Small hepatitis B virus surface protein without cytosolic and antigenic loops in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TUK
- Type
- protein
- Length
- 284 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sag protein
- UniProt
- D6CIG5
- Pockets
- 4 · best druggability 0.61
Structure
electron microscopy · 1 distinct chain · 96% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sag protein | protein | 142 | 96% helix, 0% strand | D6CIG5 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.61 | 0.82 | 21 | empty |
| 2 | 156 | 0.53 | 0.79 | 20 | empty |
| 3 | 174 | 0.44 | 0.73 | 15 | empty |
| 4 | 97 | 0.34 | 0.73 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1945 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 7TUK · Small hepatitis B virus surface protein without cytosolic and antigenic loops · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6CIG5
- Elsewhere: RCSB PDB 7TUK · PDBe 7TUK · UniProt D6CIG5
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