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Crystal structure of the C-terminal ligand-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis
Analyse Crystal structure of the C-terminal ligand-binding domain of the lysr family… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TRW
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysr-family transcriptional regulatory protein
- UniProt
- Q8D0G2
- Ligands
- 3HB, PO4
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysr-family transcriptional regulatory protein | protein | 213 | 32% helix, 32% strand | Q8D0G2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 464 | 0.71 | 0.81 | 49 | 3HB, PO4 |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 7TRW · Crystal Structure of the C-terminal Ligand-Binding Domain of the LysR family… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8D0G2
- Elsewhere: RCSB PDB 7TRW · PDBe 7TRW · UniProt Q8D0G2
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