Research workbench
Crystal structure of carbohydrate esterase pbeacxe, apoenzyme
Analyse Crystal structure of carbohydrate esterase pbeacxe, apoenzyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TOG
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sgnh hydrolase
- UniProt
- A0A5M4AV20
- Pockets
- 3 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sgnh hydrolase | protein | 378 | 26% helix, 32% strand | A0A5M4AV20 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.39 | 0.77 | 30 | empty |
| 2 | 67 | 0.36 | 0.78 | 17 | empty |
| 3 | 68 | 0.32 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 7TOG · Crystal structure of carbohydrate esterase PbeAcXE, apoenzyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5M4AV20
- Elsewhere: RCSB PDB 7TOG · PDBe 7TOG · UniProt A0A5M4AV20
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