Research workbench
Porous framework formed by assembly of a bipyridyl-conjugated helical peptide
Analyse Porous framework formed by assembly of a bipyridyl-conjugated helical peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TM1
- Type
- protein
- Length
- 27 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Helical peptide
- Ligands
- I77, I6W, CCN
Structure
x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Helical peptide | protein | 9 | 78% helix, 0% strand | — |
Ligands and binding sites
- I77 · 5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide · ligand · 3 copies · chains A, B, C
- I6W · Ethyl 5'-formyl[2,2'-bipyridine]-5-carboxylate · ligand · 3 copies · chains A, C, B
- CCN · Acetonitrile · ligand
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–C · 103 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 99 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified, 6 covalent (nonstandard, covalent ligand).
Compared structures
- 7TM1 · Porous framework formed by assembly of a bipyridyl-conjugated helical peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7TM1 · PDBe 7TM1
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