Research workbench
Crystal structure of the human sperm-expressed surface protein SPACA6
Analyse Crystal structure of the human sperm-expressed surface protein SPACA6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TA2
- Type
- protein
- Length
- 220 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sperm acrosome membrane-associated protein 6
- UniProt
- W5XKT8
- Ligands
- BR
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sperm acrosome membrane-associated protein 6 | protein | 220 | 37% helix, 27% strand | W5XKT8 |
Ligands and binding sites
- BR · Bromide ion · ion · 10 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.37 | 0.76 | 15 | empty |
| 2 | 53 | 0.30 | 0.76 | 14 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 7TA2 · Crystal structure of the human sperm-expressed surface protein SPACA6 · the same entry in another collection · chain A against A, TM-score 1.00
- W5XKT8 · AlphaFold monomer V2.0 prediction for sperm acrosome membrane- associated protein 6… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W5XKT8
- Elsewhere: RCSB PDB 7TA2 · PDBe 7TA2 · UniProt W5XKT8
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