Research workbench
Hypothetical protein APC36103 from bacillus stearothermophilus: a lipid binding protein
Analyse Hypothetical protein APC36103 from bacillus stearothermophilus: a lipid binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1PZX
- Type
- protein
- Length
- 566 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein APC36103
- UniProt
- P83812
- Ligands
- PLM
- Pockets
- 6 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein APC36103 | protein | 277 | 43% helix, 26% strand | P83812 |
| B | Hypothetical protein APC36103 | protein | 289 | 43% helix, 24% strand | P83812 |
Ligands and binding sites
- PLM · Palmitic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 154 | 0.79 | 0.95 | 29 | PLM |
| 2 | 144 | 0.78 | 0.95 | 30 | PLM |
| 3 | 340 | 0.58 | 0.76 | 48 | empty |
| 4 | 88 | 0.43 | 0.79 | 20 | empty |
| 5 | 76 | 0.43 | 0.81 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 383 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 1PZX · Hypothetical protein APC36103 from Bacillus stearothermophilus: a lipid binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P83812
- Elsewhere: RCSB PDB 1PZX · PDBe 1PZX · UniProt P83812
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.