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Crystal structure of nucleoside triphosphate pyrophosphohydrolase from klebsiella pneumoniae subsp. pneumoniae

Analyse Crystal structure of nucleoside triphosphate pyrophosphohydrolase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7SYC
Type: protein
Length: 122 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 7,8-dihydro-8-oxoguanine-triphosphatase
EC: 3.6.1.55
UniProt: A0A1Y0Q4X2
Ligands: MG
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	7,8-dihydro-8-oxoguanine-triphosphatase (EC 3.6.1.55)	protein	122	25% helix, 43% strand	A0A1Y0Q4X2

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.35	0.75	16	empty

Compared structures

7SYC · Crystal Structure of Nucleoside triphosphate pyrophosphohydrolase from Klebsiella… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1Y0Q4X2
Elsewhere: RCSB PDB 7SYC · PDBe 7SYC · UniProt A0A1Y0Q4X2

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