Research workbench
Csdav GFP mutant
Analyse Csdav GFP mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SQY
- Type
- protein
- Length
- 522 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Citrus sudden death-associated virus capsid PROTEIN,GREEN fluorescent PROTEIN,CITRUS…
- UniProt
- Q3HWZ1
- Pockets
- 6 · best druggability 0.57
Structure
electron microscopy · 3 distinct chains · 7% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Citrus sudden death-associated virus capsid PROTEIN,GREEN fluorescent PROTEIN,CITRUS sudden death-associated virus capsid protein | protein | 173 | 8% helix, 45% strand | Q3HWZ1 |
| B | Citrus sudden death-associated virus capsid PROTEIN,GREEN fluorescent PROTEIN,CITRUS sudden death-associated virus capsid protein | protein | 175 | 7% helix, 46% strand | Q3HWZ1 |
| C | Citrus sudden death-associated virus capsid PROTEIN,GREEN fluorescent PROTEIN,CITRUS sudden death-associated virus capsid protein | protein | 174 | 8% helix, 45% strand | Q3HWZ1 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.57 | 0.86 | 22 | empty |
| 2 | 160 | 0.52 | 0.79 | 39 | empty |
| 3 | 92 | 0.45 | 0.80 | 21 | empty |
| 4 | 82 | 0.38 | 0.77 | 20 | empty |
| 5 | 74 | 0.35 | 0.76 | 19 | empty |
Interfaces
3 interfaces between chains.
- A–B · 951 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 937 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 878 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7SQY · CSDaV GFP mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3HWZ1
- Elsewhere: RCSB PDB 7SQY · PDBe 7SQY · UniProt Q3HWZ1
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