Research workbench
201PHI2-1 chimallin C1 localized reconstruction
Analyse 201PHI2-1 chimallin C1 localized reconstruction in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SQS
- Type
- protein
- Length
- 560 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chimallin
- UniProt
- B3FIW8
- Pockets
- 7 · best druggability 0.82
Structure
electron microscopy · 5 distinct chains · 34% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chimallin | protein | 508 | 35% helix, 24% strand | B3FIW8 |
| E | Chimallin | protein | 14 | 43% helix, 0% strand | B3FIW8 |
| D | Chimallin | protein | 6 | 0% helix, 0% strand | B3FIW8 |
| C | Chimallin | protein | 10 | 0% helix, 0% strand | B3FIW8 |
| B | Chimallin | protein | 22 | 14% helix, 0% strand | B3FIW8 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 991 | 0.82 | 0.84 | 95 | empty |
| 2 | 590 | 0.81 | 0.86 | 60 | empty |
| 3 | 67 | 0.71 | 0.97 | 17 | empty |
| 4 | 161 | 0.55 | 0.81 | 29 | empty |
| 5 | 147 | 0.46 | 0.77 | 21 | empty |
Interfaces
4 interfaces between chains.
- A–B · 1249 Ų buried · 10 hydrogen bonds · protein-protein
- A–E · 761 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 643 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 398 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 7SQS · 201phi2-1 Chimallin C1 localized reconstruction · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3FIW8
- Elsewhere: RCSB PDB 7SQS · PDBe 7SQS · UniProt B3FIW8
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