Research workbench
GET3 bound to ATP from G. intestinalis in the closed form
Analyse GET3 bound to ATP from G. intestinalis in the closed form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SPY
- Type
- protein
- Length
- 322 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATPase ASNA1 homolog
- EC
- 3.6.-.-
- UniProt
- A8B3G9
- Ligands
- ATP, ZN, MG, SO4
- Pockets
- 5 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATPase ASNA1 homolog (EC 3.6.-.-) | protein | 322 | 48% helix, 14% strand | A8B3G9 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.39 | 0.74 | 18 | empty |
| 2 | 90 | 0.39 | 0.77 | 26 | empty |
| 3 | 88 | 0.36 | 0.75 | 24 | ATP, MG |
| 4 | 52 | 0.35 | 0.79 | 15 | empty |
| 5 | 50 | 0.27 | 0.74 | 14 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8B3G9
- Elsewhere: RCSB PDB 7SPY · PDBe 7SPY · UniProt A8B3G9
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