Research workbench
SARS-cov-2 S B.1.617.2 delta variant + S2M11 + S2L20 global refinement
Analyse SARS-cov-2 S B.1.617.2 delta variant + S2M11 + S2L20 global refinement in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SO9
- Type
- protein
- Length
- 4,434 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, FUC
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F, K | — | protein | 1024 | — | P0DTC2 |
| D, G, L | — | protein | 104 | — | — |
| E, H, M | — | protein | 122 | — | — |
| B, I, N | — | protein | 107 | — | — |
| C, J, O | — | protein | 121 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 48 copies · chains A, G, F, L, D, K, C, B, J, I, O, N
- FUC · alpha-L-fucopyranose · sugar · 3 copies · chains A, H, F, M, E, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SO9 · SARS-CoV-2 S B.1.617.2 delta variant + S2M11 + S2L20 Global Refinement · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7SO9 · PDBe 7SO9 · UniProt P0DTC2
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