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Papain-like protease of SARS cov-2 in complex with PLP_SNYDER630 inhibitor

Analyse Papain-like protease of SARS cov-2 in complex with PLP_SNYDER630 inhibitor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7SGW
Type: protein
Length: 313 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Non-structural protein 3
EC: 3.4.19.12, 3.4.22.-, 3.4.22.69
UniProt: P0DTC1
Ligands: L30, ZN, CL
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Non-structural protein 3 (EC 3.4.19.12, 3.4.22.-, 3.4.22.69)	protein	313	27% helix, 37% strand	P0DTC1

Ligands and binding sites

L30 · N-(naphthalen-1-yl)pyridine-3-carboxamide · ligand · chains A
ZN · Zinc ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	67	0.37	0.78	21	empty
2	73	0.34	0.76	17	L30

Compared structures

7SGW · Papain-Like Protease of SARS CoV-2 in complex with PLP_Snyder630 inhibitor · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DTC1
Elsewhere: RCSB PDB 7SGW · PDBe 7SGW · UniProt P0DTC1

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