Research workbench
Crystal structure of siderophore binding protein fatb from desulfitobacterium hafniense
Analyse Crystal structure of siderophore binding protein fatb from desulfitobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SF6
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferric-anguibactin-binding protein fatb
- UniProt
- B8FYL6
- Ligands
- DBS, FE, CL
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferric-anguibactin-binding protein fatb | protein | 294 | 41% helix, 17% strand | B8FYL6 |
Ligands and binding sites
- DBS · 2-(2,3-dihydroxy-benzoylamino)-3-hydroxy-propionic acid · ligand · 2 copies · chains A
- FE · Fe (III) ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.45 | 0.77 | 22 | DBS, FE |
| 2 | 60 | 0.34 | 0.77 | 14 | empty |
| 3 | 59 | 0.33 | 0.77 | 19 | empty |
Compared structures
- 7SF6 · Crystal Structure of Siderophore Binding Protein FatB from Desulfitobacterium hafniense · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8FYL6
- Elsewhere: RCSB PDB 7SF6 · PDBe 7SF6 · UniProt B8FYL6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.